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Switched to Linux host issues


I switched my domain from a windows to a linux based hosting package.  Now when I try to connect with my FTP program godaddy is responding to the connection as if it was a windows based host but the FTP is looking for a linux response so it can't connect.  Does anyone know how to correct this? Here are the errors:

Despite the server claiming it is UNIX, this actually appears to be Windows based on the paths.

Unable to verify the location of your WordPress files.