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SSL for Tomcat

I have Tomcat 8.5 deployed on a Windows server that is also running IIS 7.5. I have the tomcat site up and running listening on a different IP address than IIS is listening on. For some reason when I download my certificates from Godaddy and attempt to deploy them to my keystore, The deployment to the keystore seems to work, but when browsing the site, it only sees the private certificate (i think) It shows up as the first and last name of the user: Hardware Dept. It doesn't see the root certificate (i think). I followed the directions from godaddy about getting it set up on Tomcat 7, but have had no luck. Any chance I can get some help with that?